J4_4V19_004

3D structure

PDB id

4V19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the mammalian mitoribosome, part 1 of 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

4V19|1|A|U|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V19_004 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1385

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V19|1|A|C|874
4V19|1|A|U|875
4V19|1|A|G|876
*
4V19|1|A|C|899
4V19|1|A|C|900
*
4V19|1|A|G|917
4V19|1|A|C|918
4V19|1|A|A|919
4V19|1|A|A|920
4V19|1|A|A|921
4V19|1|A|G|922
4V19|1|A|G|923
4V19|1|A|U|924
4V19|1|A|A|925
4V19|1|A|G|926
*
4V19|1|A|U|960
4V19|1|A|G|961
4V19|1|A|A|962
4V19|1|A|A|963
4V19|1|A|U|964
4V19|1|A|G|965

Current chains

Chain A

MITORIBOSOMAL 16S RRNA

Nearby chains

Chain D

MITORIBOSOMAL PROTEIN UL2M, MRPL2