3D structure

PDB id
4V49 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
8.7 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
4V49|1|AA|C|121
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V49_001 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.1683
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V49|1|AA|G|115
4V49|1|AA|A|116
4V49|1|AA|G|117
4V49|1|AA|U|118
4V49|1|AA|A|119
4V49|1|AA|A|120
4V49|1|AA|C|121
4V49|1|AA|G|122
*
4V49|1|AA|U|239
4V49|1|AA|C|240
*
4V49|1|AA|G|286
4V49|1|AA|U|287
4V49|1|AA|A|288
4V49|1|AA|G|289
*
4V49|1|AA|C|311
4V49|1|AA|C|312

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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