J4_4V49_003

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

4V49|1|AA|A|815

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V49_003 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.1712

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V49|1|AA|G|575
4V49|1|AA|G|576
4V49|1|AA|G|577
*
4V49|1|AA|C|764
4V49|1|AA|G|765
4V49|1|AA|A|766
4V49|1|AA|A|767
4V49|1|AA|A|768
4V49|1|AA|G|769
*
4V49|1|AA|C|810
4V49|1|AA|C|811
4V49|1|AA|C|812
4V49|1|AA|U|813
4V49|1|AA|A|814
4V49|1|AA|A|815
4V49|1|AA|A|816
4V49|1|AA|C|817
4V49|1|AA|G|818
4V49|1|AA|A|819
4V49|1|AA|U|820
4V49|1|AA|G|821
*
4V49|1|AA|C|879
4V49|1|AA|C|880

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AL

30S ribosomal protein S12

Chain AO

30S ribosomal protein S15

Chain AQ

30S ribosomal protein S17

Chain B0

Large subunit ribosomal RNA; LSU rRNA