J4_4V49_015

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V49_015 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.2372

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V49|1|B0|C|308
4V49|1|B0|G|309
4V49|1|B0|A|310
4V49|1|B0|A|311
4V49|1|B0|G|312
*
4V49|1|B0|C|327
4V49|1|B0|A|328
4V49|1|B0|C|329
4V49|1|B0|C|330
*
4V49|1|B0|G|334
4V49|1|B0|A|335
4V49|1|B0|A|336
*
4V49|1|B0|U|348
4V49|1|B0|G|349
4V49|1|B0|U|350
4V49|1|B0|A|351
4V49|1|B0|G|352

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BC

50S ribosomal protein L4

Chain BS

50S ribosomal protein L24