J4_4V49_016
3D structure
- PDB id
- 4V49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 8.7 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 4V49|1|B0|G|1284, 4V49|1|B0|A|1285, 4V49|1|B0|U|1286, 4V49|1|B0|A|1288, 4V49|1|B0|G|1664
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V49_016 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.304
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V49|1|B0|C|1283
4V49|1|B0|G|1284
4V49|1|B0|A|1285
4V49|1|B0|U|1286
4V49|1|B0|A|1287
4V49|1|B0|A|1288
4V49|1|B0|A|1289
*
4V49|1|B0|U|1307
4V49|1|B0|C|1308
*
4V49|1|B0|G|1662
4V49|1|B0|C|1663
4V49|1|B0|G|1664
4V49|1|B0|C|1665
*
4V49|1|B0|G|1992
4V49|1|B0|G|1993
Current chains
- Chain B0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain BL
- 50S ribosomal protein L17
- Chain BQ
- 50S ribosomal protein L22
- Chain BZ
- 50S ribosomal protein L32
Coloring options: