J4_4V4A_009

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4A_009 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.1431

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V4A|1|B0|G|1763
4V4A|1|B0|A|1764
4V4A|1|B0|C|1765
4V4A|1|B0|U|1766
4V4A|1|B0|G|1767
*
4V4A|1|B0|C|1779
4V4A|1|B0|A|1780
4V4A|1|B0|C|1781
4V4A|1|B0|A|1782
4V4A|1|B0|G|1783
*
4V4A|1|B0|U|1819
4V4A|1|B0|G|1820
4V4A|1|B0|A|1821
4V4A|1|B0|C|1822
*
4V4A|1|B0|G|1958
4V4A|1|B0|U|1959
4V4A|1|B0|A|1960
4V4A|1|B0|A|1961
4V4A|1|B0|C|1962

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BA

50S ribosomal protein L2