J4_4V4A_012

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4A_012 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1654

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V4A|1|B0|G|2622
4V4A|1|B0|A|2623
4V4A|1|B0|G|2624
4V4A|1|B0|U|2625
*
4V4A|1|B0|A|2653
4V4A|1|B0|A|2654
4V4A|1|B0|C|2655
*
4V4A|1|B0|G|2711
4V4A|1|B0|G|2712
4V4A|1|B0|A|2713
4V4A|1|B0|A|2714
4V4A|1|B0|C|2715
4V4A|1|B0|G|2716
*
4V4A|1|B0|C|2748
4V4A|1|B0|A|2749
4V4A|1|B0|G|2750
4V4A|1|B0|C|2751

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BH

50S ribosomal protein L13

Chain BI

50S ribosomal protein L14