J4_4V4G_019

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4G_019 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.3771

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V4G|1|DB|G|1763
4V4G|1|DB|A|1764
4V4G|1|DB|C|1765
4V4G|1|DB|U|1766
4V4G|1|DB|G|1767
*
4V4G|1|DB|C|1779
4V4G|1|DB|A|1780
4V4G|1|DB|C|1781
4V4G|1|DB|A|1782
4V4G|1|DB|G|1783
*
4V4G|1|DB|U|1819
4V4G|1|DB|G|1820
4V4G|1|DB|A|1821
4V4G|1|DB|C|1822
*
4V4G|1|DB|G|1958
4V4G|1|DB|U|1959
4V4G|1|DB|A|1960
4V4G|1|DB|A|1961
4V4G|1|DB|C|1962

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L2