J4_4V4I_006

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4V4I|1|w|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4I_006 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.2596

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4I|1|w|G|1310
4V4I|1|w|G|1311
4V4I|1|w|U|1312
4V4I|1|w|U|1313
4V4I|1|w|C|1314
*
4V4I|1|w|G|1338
4V4I|1|w|G|1339
4V4I|1|w|U|1340
4V4I|1|w|U|1341
4V4I|1|w|A|1342
4V4I|1|w|G|1343
*
4V4I|1|w|C|1404
4V4I|1|w|U|1405
*
4V4I|1|w|A|1597
4V4I|1|w|C|1598
4V4I|1|w|C|1599
4V4I|1|w|C|1600
4V4I|1|w|G|1601
4V4I|1|w|U|1602
4V4I|1|w|A|1603
4V4I|1|w|C|1604

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain R

50S ribosomal protein L23

Chain Z

50S ribosomal protein L34