J4_4V4J_007

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4V4J|1|w|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4J_007 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.2221

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V4J|1|w|U|1313
4V4J|1|w|C|1314
*
4V4J|1|w|G|1338
4V4J|1|w|G|1339
4V4J|1|w|U|1340
4V4J|1|w|U|1341
4V4J|1|w|A|1342
4V4J|1|w|G|1343
*
4V4J|1|w|C|1404
4V4J|1|w|U|1405
*
4V4J|1|w|A|1597
4V4J|1|w|C|1598
4V4J|1|w|C|1599
4V4J|1|w|C|1600
4V4J|1|w|G|1601
4V4J|1|w|U|1602
4V4J|1|w|A|1603

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain R

50S ribosomal protein L23

Chain Z

50S ribosomal protein L34