J4_4V4J_013
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V4J|1|y|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V4J_013 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.2791
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V4J|1|y|G|115
4V4J|1|y|A|116
4V4J|1|y|G|117
4V4J|1|y|U|118
4V4J|1|y|A|119
4V4J|1|y|A|120
4V4J|1|y|C|121
4V4J|1|y|G|122
*
4V4J|1|y|U|239
4V4J|1|y|C|240
*
4V4J|1|y|G|286
4V4J|1|y|U|287
4V4J|1|y|A|288
4V4J|1|y|G|289
*
4V4J|1|y|C|311
4V4J|1|y|C|312
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain m
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S16
- Chain r
- 30S ribosomal protein S17
Coloring options: