J4_4V4J_018
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GUGG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V4J|1|z|U|8, 4V4J|1|z|U|47, 4V4J|1|z|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V4J_018 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.2054
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4V4J|1|z|G|7
4V4J|1|z|U|8
4V4J|1|z|G|9
4V4J|1|z|G|10
*
4V4J|1|z|C|25
4V4J|1|z|G|26
4V4J|1|z|U|27
*
4V4J|1|z|A|43
4V4J|1|z|A|44
4V4J|1|z|G|45
4V4J|1|z|A|46
4V4J|1|z|U|47
4V4J|1|z|C|48
4V4J|1|z|G|49
*
4V4J|1|z|C|65
4V4J|1|z|C|66
Current chains
- Chain z
- P-site tRNAfMET
Nearby chains
- Chain K
- 50S ribosomal protein L16
- Chain n
- 30S ribosomal protein S13
- Chain w
- Large subunit ribosomal RNA; LSU rRNA
- Chain y
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: