J4_4V4S_014
3D structure
- PDB id
- 4V4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.76 Å
Loop
- Sequence
- UUAG*CGC*GAGGUCC*GA
- Length
- 16 nucleotides
- Bulged bases
- 4V4S|1|AV|U|8, 4V4S|1|AV|U|47, 4V4S|1|AV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V4S_014 not in the Motif Atlas
- Homologous match to J4_4V9Q_031
- Geometric discrepancy: 0.3096
- The information below is about J4_4V9Q_031
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
4V4S|1|AV|U|7
4V4S|1|AV|U|8
4V4S|1|AV|A|9
4V4S|1|AV|G|10
*
4V4S|1|AV|C|25
4V4S|1|AV|G|26
4V4S|1|AV|C|27
*
4V4S|1|AV|G|43
4V4S|1|AV|A|44
4V4S|1|AV|G|45
4V4S|1|AV|G|46
4V4S|1|AV|U|47
4V4S|1|AV|C|48
4V4S|1|AV|C|49
*
4V4S|1|AV|G|65
4V4S|1|AV|A|66
Current chains
- Chain AV
- P-site tRNA (Phe)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S ribosomal protein S13
- Chain B0
- 50S ribosomal protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S ribosomal protein L16
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