J4_4V4V_001

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V4V|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4V_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.2032

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V4V|1|AA|G|115
4V4V|1|AA|A|116
4V4V|1|AA|G|117
4V4V|1|AA|U|118
4V4V|1|AA|A|119
4V4V|1|AA|A|120
4V4V|1|AA|U|121
4V4V|1|AA|G|122
*
4V4V|1|AA|U|239
4V4V|1|AA|G|240
*
4V4V|1|AA|C|286
4V4V|1|AA|U|287
4V4V|1|AA|A|288
4V4V|1|AA|G|289
*
4V4V|1|AA|C|311
4V4V|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal subunit protein S16

Chain AQ

30S ribosomal subunit protein S17