J4_4V4V_002

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V4V|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4V_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.5852

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V4V|1|AA|G|142
4V4V|1|AA|A|143
4V4V|1|AA|G|144
*
4V4V|1|AA|C|178
4V4V|1|AA|A|179
4V4V|1|AA|U|180
4V4V|1|AA|A|181
4V4V|1|AA|A|182
4V4V|1|AA|C|183
4V4V|1|AA|G|184
*
4V4V|1|AA|C|193
4V4V|1|AA|C|194
4V4V|1|AA|A|195
4V4V|1|AA|A|196
4V4V|1|AA|A|197
4V4V|1|AA|G|198
*
4V4V|1|AA|U|219
4V4V|1|AA|G|220
4V4V|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal subunit protein S20