J4_4V4V_009

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V4V|1|B0|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4V_009 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2474

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V4V|1|B0|C|268
4V4V|1|B0|C|269
*
4V4V|1|B0|G|370
4V4V|1|B0|A|371
4V4V|1|B0|G|372
4V4V|1|B0|U|373
4V4V|1|B0|A|374
4V4V|1|B0|G|375
*
4V4V|1|B0|U|399
4V4V|1|B0|G|400
4V4V|1|B0|A|401
4V4V|1|B0|A|402
4V4V|1|B0|U|403
4V4V|1|B0|A|404
4V4V|1|B0|U|405
4V4V|1|B0|G|406
*
4V4V|1|B0|C|421
4V4V|1|B0|A|422
4V4V|1|B0|A|423
4V4V|1|B0|G|424

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L9