J4_4V4X_002

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4X_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.2189

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V4X|1|AA|G|142
4V4X|1|AA|A|143
4V4X|1|AA|G|144
*
4V4X|1|AA|C|178
4V4X|1|AA|A|179
4V4X|1|AA|U|180
4V4X|1|AA|G|181
4V4X|1|AA|U|182
4V4X|1|AA|G|183
*
4V4X|1|AA|C|194
4V4X|1|AA|A|195
4V4X|1|AA|A|196
4V4X|1|AA|A|197
4V4X|1|AA|G|198
*
4V4X|1|AA|C|219
4V4X|1|AA|G|220
4V4X|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AW

30S ribosomal protein S20