J4_4V4Y_014
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 4V4Y|1|BA|A|2286, 4V4Y|1|BA|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V4Y_014 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.3869
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4Y|1|BA|C|2285
4V4Y|1|BA|A|2286
4V4Y|1|BA|A|2287
4V4Y|1|BA|A|2288
4V4Y|1|BA|G|2289
*
4V4Y|1|BA|C|2343
4V4Y|1|BA|U|2344
4V4Y|1|BA|G|2345
4V4Y|1|BA|A|2346
4V4Y|1|BA|C|2347
*
4V4Y|1|BA|G|2370
4V4Y|1|BA|G|2371
4V4Y|1|BA|G|2372
*
4V4Y|1|BA|C|2381
4V4Y|1|BA|G|2382
4V4Y|1|BA|G|2383
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B5
- 50S ribosomal protein L33
- Chain B7
- 50S ribosomal protein L35
- Chain BR
- 50S ribosomal protein L18
- Chain BZ
- Ribosomal protein L27
Coloring options: