J4_4V50_027
3D structure
- PDB id
- 4V50 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.22 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 4V50|1|DB|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V50_027 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.1023
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V50|1|DB|C|2285
4V50|1|DB|G|2286
4V50|1|DB|A|2287
4V50|1|DB|A|2288
4V50|1|DB|G|2289
*
4V50|1|DB|U|2343
4V50|1|DB|U|2344
4V50|1|DB|G|2345
4V50|1|DB|A|2346
4V50|1|DB|C|2347
*
4V50|1|DB|G|2370
4V50|1|DB|G|2371
4V50|1|DB|U|2372
*
4V50|1|DB|A|2381
4V50|1|DB|G|2382
4V50|1|DB|G|2383
Current chains
- Chain DB
- 23S ribosomal RNA
Nearby chains
- Chain D1
- 50S ribosomal protein L33
- Chain D3
- 50S ribosomal protein L35
- Chain DO
- 50S ribosomal protein L18
- Chain DW
- 50S ribosomal protein L27
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