J4_4V51_002

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V51|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V51_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1109

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V51|1|AA|G|142
4V51|1|AA|A|143
4V51|1|AA|G|144
*
4V51|1|AA|C|178
4V51|1|AA|A|179
4V51|1|AA|U|180
4V51|1|AA|G|181
4V51|1|AA|U|182
4V51|1|AA|G|183
*
4V51|1|AA|C|194
4V51|1|AA|A|195
4V51|1|AA|A|196
4V51|1|AA|A|197
4V51|1|AA|G|198
*
4V51|1|AA|C|219
4V51|1|AA|G|220
4V51|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20