J4_4V51_031

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4V51|1|DA|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V51_031 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.1736

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4V51|1|DA|C|2285
4V51|1|DA|A|2286
4V51|1|DA|A|2287
4V51|1|DA|A|2288
4V51|1|DA|G|2289
*
4V51|1|DA|C|2343
4V51|1|DA|U|2344
4V51|1|DA|G|2345
4V51|1|DA|A|2346
4V51|1|DA|C|2347
*
4V51|1|DA|G|2370
4V51|1|DA|G|2371
4V51|1|DA|G|2372
*
4V51|1|DA|C|2381
4V51|1|DA|G|2382
4V51|1|DA|G|2383

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D0

50S RIBOSOMAL PROTEIN L27

Chain D6

50S RIBOSOMAL PROTEIN L33

Chain D8

50S RIBOSOMAL PROTEIN L35