J4_4V53_011

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V53_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.068

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V53|1|BB|A|1772
4V53|1|BB|A|1773
4V53|1|BB|C|1774
4V53|1|BB|U|1775
4V53|1|BB|G|1776
*
4V53|1|BB|C|1788
4V53|1|BB|A|1789
4V53|1|BB|C|1790
4V53|1|BB|A|1791
4V53|1|BB|G|1792
*
4V53|1|BB|U|1827
4V53|1|BB|G|1828
4V53|1|BB|A|1829
4V53|1|BB|C|1830
*
4V53|1|BB|G|1975
4V53|1|BB|U|1976
4V53|1|BB|A|1977
4V53|1|BB|A|1978
4V53|1|BB|U|1979

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2