J4_4V5A_035

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4V5A|1|CW|U|8, 4V5A|1|CW|U|48, 4V5A|1|CW|C|49

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5A_035 not in the Motif Atlas

Homologous match to J4_4TUE_004

Geometric discrepancy: 0.3406

The information below is about J4_4TUE_004

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

4V5A|1|CW|G|7
4V5A|1|CW|U|8
4V5A|1|CW|G|9
4V5A|1|CW|G|10
*
4V5A|1|CW|C|26
4V5A|1|CW|G|27
4V5A|1|CW|U|28
*
4V5A|1|CW|A|44
4V5A|1|CW|A|45
4V5A|1|CW|G|46
4V5A|1|CW|G|47
4V5A|1|CW|U|48
4V5A|1|CW|C|49
4V5A|1|CW|G|50
*
4V5A|1|CW|C|66
4V5A|1|CW|C|67

Current chains

Chain CW

TRNA-FMET

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S7

Chain CK

30S RIBOSOMAL PROTEIN S11

Chain D6

50S RIBOSOMAL PROTEIN L33