J4_4V5B_030

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4V5B|1|AB|G|1341, 4V5B|1|AB|A|1598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5B_030 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1593

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V5B|1|AB|U|1313
4V5B|1|AB|C|1314
*
4V5B|1|AB|G|1338
4V5B|1|AB|G|1339
4V5B|1|AB|U|1340
4V5B|1|AB|G|1341
4V5B|1|AB|A|1342
4V5B|1|AB|G|1343
*
4V5B|1|AB|C|1404
4V5B|1|AB|U|1405
*
4V5B|1|AB|A|1597
4V5B|1|AB|A|1598
4V5B|1|AB|U|1599
4V5B|1|AB|C|1600
4V5B|1|AB|G|1601
4V5B|1|AB|U|1602
4V5B|1|AB|A|1603

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AT

50S RIBOSOMAL PROTEIN L23

Chain AX

50S RIBOSOMAL PROTEIN L29