J4_4V5B_032

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5B_032 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1689

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V5B|1|AB|G|2643
4V5B|1|AB|G|2644
4V5B|1|AB|G|2645
4V5B|1|AB|C|2646
*
4V5B|1|AB|G|2674
4V5B|1|AB|A|2675
4V5B|1|AB|C|2676
*
4V5B|1|AB|G|2731
4V5B|1|AB|G|2732
4V5B|1|AB|A|2733
4V5B|1|AB|A|2734
4V5B|1|AB|G|2735
*
4V5B|1|AB|U|2769
4V5B|1|AB|G|2770
4V5B|1|AB|C|2771

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L3

Chain AJ

50S RIBOSOMAL PROTEIN L13

Chain AK

50S RIBOSOMAL PROTEIN L14