J4_4V5B_035

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V5B|1|CB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5B_035 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2636

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5B|1|CB|C|268
4V5B|1|CB|C|269
*
4V5B|1|CB|G|370
4V5B|1|CB|A|371
4V5B|1|CB|G|372
4V5B|1|CB|U|373
4V5B|1|CB|A|374
4V5B|1|CB|G|375
*
4V5B|1|CB|U|399
4V5B|1|CB|G|400
4V5B|1|CB|A|401
4V5B|1|CB|A|402
4V5B|1|CB|U|403
4V5B|1|CB|A|404
4V5B|1|CB|U|405
4V5B|1|CB|G|406
*
4V5B|1|CB|C|421
4V5B|1|CB|A|422
4V5B|1|CB|A|423
4V5B|1|CB|G|424

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CH

50S RIBOSOMAL PROTEIN L9

Chain CZ

50S RIBOSOMAL PROTEIN L31