J4_4V5C_002

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V5C|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5C_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.093

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V5C|1|AA|G|142
4V5C|1|AA|A|143
4V5C|1|AA|G|144
*
4V5C|1|AA|C|178
4V5C|1|AA|A|179
4V5C|1|AA|U|180
4V5C|1|AA|G|181
4V5C|1|AA|U|182
4V5C|1|AA|G|183
*
4V5C|1|AA|C|194
4V5C|1|AA|A|195
4V5C|1|AA|A|196
4V5C|1|AA|A|197
4V5C|1|AA|G|198
*
4V5C|1|AA|C|219
4V5C|1|AA|G|220
4V5C|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20