J4_4V5C_034

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4V5C|1|BA|A|2288, 4V5C|1|BA|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5C_034 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.1609

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4V5C|1|BA|C|2285
4V5C|1|BA|A|2286
4V5C|1|BA|A|2287
4V5C|1|BA|A|2288
4V5C|1|BA|G|2289
*
4V5C|1|BA|C|2343
4V5C|1|BA|U|2344
4V5C|1|BA|G|2345
4V5C|1|BA|A|2346
4V5C|1|BA|C|2347
*
4V5C|1|BA|G|2370
4V5C|1|BA|G|2371
4V5C|1|BA|G|2372
*
4V5C|1|BA|C|2381
4V5C|1|BA|G|2382
4V5C|1|BA|G|2383

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain B6

50S RIBOSOMAL PROTEIN L33

Chain B8

50S RIBOSOMAL PROTEIN L35