J4_4V5F_017

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5F_017 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1286

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V5F|1|CA|G|142
4V5F|1|CA|A|143
4V5F|1|CA|G|144
*
4V5F|1|CA|C|178
4V5F|1|CA|A|179
4V5F|1|CA|U|180
4V5F|1|CA|G|181
4V5F|1|CA|U|182
4V5F|1|CA|G|183
*
4V5F|1|CA|C|194
4V5F|1|CA|A|195
4V5F|1|CA|A|196
4V5F|1|CA|A|197
4V5F|1|CA|G|198
*
4V5F|1|CA|C|219
4V5F|1|CA|G|220
4V5F|1|CA|C|221

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S20