J4_4V5H_001

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V5H|1|AA|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5H_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.4251

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5H|1|AA|G|115
4V5H|1|AA|A|116
4V5H|1|AA|G|117
4V5H|1|AA|U|118
4V5H|1|AA|A|119
4V5H|1|AA|A|120
4V5H|1|AA|U|121
4V5H|1|AA|G|122
*
4V5H|1|AA|U|239
4V5H|1|AA|G|240
*
4V5H|1|AA|C|286
4V5H|1|AA|U|287
4V5H|1|AA|A|288
4V5H|1|AA|G|289
*
4V5H|1|AA|C|311
4V5H|1|AA|C|312

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AQ

30S RIBOSOMAL PROTEIN S17