J4_4V5H_005

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V5H|1|BB|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5H_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1846

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5H|1|BB|C|268
4V5H|1|BB|C|269
*
4V5H|1|BB|G|370
4V5H|1|BB|A|371
4V5H|1|BB|G|372
4V5H|1|BB|U|373
4V5H|1|BB|A|374
4V5H|1|BB|G|375
*
4V5H|1|BB|U|399
4V5H|1|BB|G|400
4V5H|1|BB|A|401
4V5H|1|BB|A|402
4V5H|1|BB|U|403
4V5H|1|BB|A|404
4V5H|1|BB|U|405
4V5H|1|BB|G|406
*
4V5H|1|BB|C|421
4V5H|1|BB|A|422
4V5H|1|BB|A|423
4V5H|1|BB|G|424

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L28

Chain BH

50S RIBOSOMAL PROTEIN L9