J4_4V5H_008

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

4V5H|1|BB|G|1271, 4V5H|1|BB|A|1272, 4V5H|1|BB|U|1273, 4V5H|1|BB|U|1647

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5H_008 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1832

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4V5H|1|BB|C|1270
4V5H|1|BB|G|1271
4V5H|1|BB|A|1272
4V5H|1|BB|U|1273
4V5H|1|BB|A|1274
4V5H|1|BB|A|1275
4V5H|1|BB|A|1276
*
4V5H|1|BB|U|1294
4V5H|1|BB|C|1295
*
4V5H|1|BB|G|1645
4V5H|1|BB|C|1646
4V5H|1|BB|U|1647
4V5H|1|BB|U|1648
*
4V5H|1|BB|A|2009
4V5H|1|BB|G|2010

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L32

Chain BN

50S RIBOSOMAL PROTEIN L17

Chain BS

50S RIBOSOMAL PROTEIN L22