J4_4V5H_009

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4V5H|1|BB|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5H_009 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.1278

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V5H|1|BB|G|1310
4V5H|1|BB|G|1311
4V5H|1|BB|U|1312
4V5H|1|BB|U|1313
4V5H|1|BB|C|1314
*
4V5H|1|BB|G|1338
4V5H|1|BB|G|1339
4V5H|1|BB|U|1340
4V5H|1|BB|G|1341
4V5H|1|BB|A|1342
4V5H|1|BB|G|1343
*
4V5H|1|BB|C|1404
4V5H|1|BB|U|1405
*
4V5H|1|BB|A|1597
4V5H|1|BB|A|1598
4V5H|1|BB|U|1599
4V5H|1|BB|C|1600
4V5H|1|BB|G|1601
4V5H|1|BB|U|1602
4V5H|1|BB|A|1603
4V5H|1|BB|C|1604

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L34

Chain BT

50S RIBOSOMAL PROTEIN L23