J4_4V5K_012

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5K_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0529

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V5K|1|BA|G|1772
4V5K|1|BA|A|1773
4V5K|1|BA|C|1774
4V5K|1|BA|U|1775
4V5K|1|BA|G|1776
*
4V5K|1|BA|C|1788
4V5K|1|BA|A|1789
4V5K|1|BA|C|1790
4V5K|1|BA|A|1791
4V5K|1|BA|G|1792
*
4V5K|1|BA|C|1827
4V5K|1|BA|G|1828
4V5K|1|BA|A|1829
4V5K|1|BA|C|1830
*
4V5K|1|BA|G|1975
4V5K|1|BA|U|1976
4V5K|1|BA|A|1977
4V5K|1|BA|A|1978
4V5K|1|BA|C|1979

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S RIBOSOMAL PROTEIN L2