J4_4V5M_004

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4V5M|1|AV|U|47, 4V5M|1|AV|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5M_004 not in the Motif Atlas

Homologous match to J4_4V9Q_031

Geometric discrepancy: 0.1961

The information below is about J4_4V9Q_031

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V5M|1|AV|G|7
4V5M|1|AV|U|8
4V5M|1|AV|G|9
4V5M|1|AV|G|10
*
4V5M|1|AV|C|25
4V5M|1|AV|G|26
4V5M|1|AV|U|27
*
4V5M|1|AV|A|43
4V5M|1|AV|A|44
4V5M|1|AV|G|45
4V5M|1|AV|G|46
4V5M|1|AV|U|47
4V5M|1|AV|C|48
4V5M|1|AV|G|49
*
4V5M|1|AV|C|65
4V5M|1|AV|C|66

Current chains

Chain AV

TRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain B6

50S RIBOSOMAL PROTEIN L33

Chain BA

Large subunit ribosomal RNA; LSU rRNA