J4_4V5M_009

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4V5M|1|BA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5M_009 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.1139

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V5M|1|BA|G|1310
4V5M|1|BA|G|1311
4V5M|1|BA|U|1312
4V5M|1|BA|U|1313
4V5M|1|BA|C|1314
*
4V5M|1|BA|G|1338
4V5M|1|BA|G|1339
4V5M|1|BA|U|1340
4V5M|1|BA|U|1341
4V5M|1|BA|A|1342
4V5M|1|BA|G|1343
*
4V5M|1|BA|C|1404
4V5M|1|BA|U|1405
*
4V5M|1|BA|A|1597
4V5M|1|BA|C|1598
4V5M|1|BA|C|1599
4V5M|1|BA|C|1600
4V5M|1|BA|G|1601
4V5M|1|BA|U|1602
4V5M|1|BA|A|1603
4V5M|1|BA|C|1604

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BX

50S RIBOSOMAL PROTEIN L23