3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
GGGC*GAC*GGAAG*CGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V5M_015 not in the Motif Atlas
Homologous match to J4_9DFE_010
Geometric discrepancy: 0.1223
The information below is about J4_9DFE_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

4V5M|1|BA|G|2643
4V5M|1|BA|G|2644
4V5M|1|BA|G|2645
4V5M|1|BA|C|2646
*
4V5M|1|BA|G|2674
4V5M|1|BA|A|2675
4V5M|1|BA|C|2676
*
4V5M|1|BA|G|2731
4V5M|1|BA|G|2732
4V5M|1|BA|A|2733
4V5M|1|BA|A|2734
4V5M|1|BA|G|2735
*
4V5M|1|BA|C|2769
4V5M|1|BA|G|2770
4V5M|1|BA|C|2771

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain BE
50S RIBOSOMAL PROTEIN L3
Chain BN
50S RIBOSOMAL PROTEIN L13
Chain BO
50S RIBOSOMAL PROTEIN L14

Coloring options:


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