3D structure

PDB id
4V5O (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.93 Å

Loop

Sequence
AAG*CGAAAG*CUAUAAACUAUA*UU
Length
23 nucleotides
Bulged bases
4V5O|1|BA|A|617, 4V5O|1|BA|A|1004, 4V5O|1|BA|U|1007, 4V5O|1|BA|U|1009
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V5O_006 not in the Motif Atlas
Homologous match to J4_8C3A_022
Geometric discrepancy: 0.1544
The information below is about J4_8C3A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.4
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4V5O|1|BA|A|616
4V5O|1|BA|A|617
4V5O|1|BA|G|618
*
4V5O|1|BA|C|953
4V5O|1|BA|G|954
4V5O|1|BA|A|955
4V5O|1|BA|A|956
4V5O|1|BA|A|957
4V5O|1|BA|G|958
*
4V5O|1|BA|C|999
4V5O|1|BA|U|1000
4V5O|1|BA|A|1001
4V5O|1|BA|U|1002
4V5O|1|BA|A|1003
4V5O|1|BA|A|1004
4V5O|1|BA|A|1005
4V5O|1|BA|C|1006
4V5O|1|BA|U|1007
4V5O|1|BA|A|1008
4V5O|1|BA|U|1009
4V5O|1|BA|A|1010
*
4V5O|1|BA|U|1075
4V5O|1|BA|U|1076

Current chains

Chain BA
18S RRNA

Nearby chains

Chain B5
RIBOSOMAL PROTEIN S26E CONTAINING PROTEIN
Chain BH
RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN
Chain BK
RPS14E
Chain BL
40S RIBOSOMAL PROTEIN S12
Chain BO
RPS13E
Chain BQ
RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN

Coloring options:


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