J4_4V5O_006
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- AAG*CGAAAG*CUAUAAACUAUA*UU
- Length
- 23 nucleotides
- Bulged bases
- 4V5O|1|BA|A|617, 4V5O|1|BA|A|1004, 4V5O|1|BA|U|1007, 4V5O|1|BA|U|1009
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5O_006 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1544
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V5O|1|BA|A|616
4V5O|1|BA|A|617
4V5O|1|BA|G|618
*
4V5O|1|BA|C|953
4V5O|1|BA|G|954
4V5O|1|BA|A|955
4V5O|1|BA|A|956
4V5O|1|BA|A|957
4V5O|1|BA|G|958
*
4V5O|1|BA|C|999
4V5O|1|BA|U|1000
4V5O|1|BA|A|1001
4V5O|1|BA|U|1002
4V5O|1|BA|A|1003
4V5O|1|BA|A|1004
4V5O|1|BA|A|1005
4V5O|1|BA|C|1006
4V5O|1|BA|U|1007
4V5O|1|BA|A|1008
4V5O|1|BA|U|1009
4V5O|1|BA|A|1010
*
4V5O|1|BA|U|1075
4V5O|1|BA|U|1076
Current chains
- Chain BA
- 18S RRNA
Nearby chains
- Chain B5
- RIBOSOMAL PROTEIN S26E CONTAINING PROTEIN
- Chain BH
- RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN
- Chain BK
- RPS14E
- Chain BL
- 40S RIBOSOMAL PROTEIN S12
- Chain BO
- RPS13E
- Chain BQ
- RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN
Coloring options: