J4_4V5P_002

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V5P|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5P_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0919

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V5P|1|AA|G|142
4V5P|1|AA|A|143
4V5P|1|AA|G|144
*
4V5P|1|AA|C|178
4V5P|1|AA|A|179
4V5P|1|AA|U|180
4V5P|1|AA|G|181
4V5P|1|AA|U|182
4V5P|1|AA|G|183
*
4V5P|1|AA|C|194
4V5P|1|AA|A|195
4V5P|1|AA|A|196
4V5P|1|AA|A|197
4V5P|1|AA|G|198
*
4V5P|1|AA|C|219
4V5P|1|AA|G|220
4V5P|1|AA|C|221

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20