J4_4V61_001

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V61|1|AA|C|105

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V61_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.2541

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V61|1|AA|G|99
4V61|1|AA|A|100
4V61|1|AA|G|101
4V61|1|AA|U|102
4V61|1|AA|A|103
4V61|1|AA|A|104
4V61|1|AA|C|105
4V61|1|AA|G|106
*
4V61|1|AA|U|210
4V61|1|AA|C|211
*
4V61|1|AA|G|257
4V61|1|AA|U|258
4V61|1|AA|A|259
4V61|1|AA|G|260
*
4V61|1|AA|C|282
4V61|1|AA|C|283

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

Ribosomal Protein S12

Chain AP

Ribosomal Protein S16

Chain AQ

Ribosomal Protein S17