J4_4V61_002

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAG*CGUAGG*CAAAAG*CGC

Length

18 nucleotides

Bulged bases

4V61|1|AA|A|180

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V61_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2285

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V61|1|AA|G|126
4V61|1|AA|A|127
4V61|1|AA|G|128
*
4V61|1|AA|C|162
4V61|1|AA|G|163
4V61|1|AA|U|164
4V61|1|AA|A|165
4V61|1|AA|G|166
4V61|1|AA|G|167
*
4V61|1|AA|C|176
4V61|1|AA|A|177
4V61|1|AA|A|178
4V61|1|AA|A|179
4V61|1|AA|A|180
4V61|1|AA|G|181
*
4V61|1|AA|C|190
4V61|1|AA|G|191
4V61|1|AA|C|192

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

Ribosomal Protein S16

Chain AT

Ribosomal Protein S20