J4_4V61_017

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GACC*GAC*GGAGCG*CCAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V61_017 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1965

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V61|1|BA|G|2660
4V61|1|BA|A|2661
4V61|1|BA|C|2662
4V61|1|BA|C|2663
*
4V61|1|BA|G|2691
4V61|1|BA|A|2692
4V61|1|BA|C|2693
*
4V61|1|BA|G|2749
4V61|1|BA|G|2750
4V61|1|BA|A|2751
4V61|1|BA|G|2752
4V61|1|BA|C|2753
4V61|1|BA|G|2754
*
4V61|1|BA|C|2786
4V61|1|BA|C|2787
4V61|1|BA|A|2788
4V61|1|BA|C|2789

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

Ribosomal Protein L3

Chain BL

Ribosomal Protein L13

Chain BM

Ribosomal Protein L14