J4_4V65_007

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V65|1|BB|U|403, 4V65|1|BB|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V65_007 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.5683

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V65|1|BB|C|268
4V65|1|BB|C|269
*
4V65|1|BB|G|370
4V65|1|BB|A|371
4V65|1|BB|G|372
4V65|1|BB|U|373
4V65|1|BB|A|374
4V65|1|BB|G|375
*
4V65|1|BB|U|399
4V65|1|BB|G|400
4V65|1|BB|A|401
4V65|1|BB|A|402
4V65|1|BB|U|403
4V65|1|BB|A|404
4V65|1|BB|U|405
4V65|1|BB|G|406
*
4V65|1|BB|C|421
4V65|1|BB|A|422
4V65|1|BB|A|423
4V65|1|BB|G|424

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L9

Chain BS

50S ribosomal protein L31