J4_4V67_011

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4V67|1|BA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V67_011 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0957

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V67|1|BA|U|1313
4V67|1|BA|C|1314
*
4V67|1|BA|G|1338
4V67|1|BA|G|1339
4V67|1|BA|U|1340
4V67|1|BA|U|1341
4V67|1|BA|A|1342
4V67|1|BA|G|1343
*
4V67|1|BA|C|1404
4V67|1|BA|U|1405
*
4V67|1|BA|A|1597
4V67|1|BA|C|1598
4V67|1|BA|C|1599
4V67|1|BA|C|1600
4V67|1|BA|G|1601
4V67|1|BA|U|1602
4V67|1|BA|A|1603

Current chains

Chain BA

23S RRNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23