J4_4V68_015

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V68|1|BA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V68_015 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0778

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V68|1|BA|U|1833
4V68|1|BA|U|1834
4V68|1|BA|G|1835
*
4V68|1|BA|C|1905
4V68|1|BA|G|1906
*
4V68|1|BA|C|1924
4V68|1|BA|C|1925
4V68|1|BA|U|1926
4V68|1|BA|A|1927
4V68|1|BA|A|1928
4V68|1|BA|G|1929
4V68|1|BA|G|1930
4V68|1|BA|U|1931
4V68|1|BA|A|1932
4V68|1|BA|G|1933
*
4V68|1|BA|C|1967
4V68|1|BA|G|1968
4V68|1|BA|A|1969
4V68|1|BA|A|1970
4V68|1|BA|A|1971
4V68|1|BA|A|1972

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2