J4_4V69_007

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V69|1|BB|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V69_007 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2414

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V69|1|BB|C|268
4V69|1|BB|C|269
*
4V69|1|BB|G|370
4V69|1|BB|A|371
4V69|1|BB|G|372
4V69|1|BB|U|373
4V69|1|BB|A|374
4V69|1|BB|G|375
*
4V69|1|BB|U|399
4V69|1|BB|G|400
4V69|1|BB|A|401
4V69|1|BB|A|402
4V69|1|BB|U|403
4V69|1|BB|A|404
4V69|1|BB|U|405
4V69|1|BB|G|406
*
4V69|1|BB|C|421
4V69|1|BB|A|422
4V69|1|BB|A|423
4V69|1|BB|G|424

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28