J4_4V69_010

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

4V69|1|BB|G|1271, 4V69|1|BB|A|1272, 4V69|1|BB|U|1273, 4V69|1|BB|U|1647

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V69_010 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1622

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4V69|1|BB|C|1270
4V69|1|BB|G|1271
4V69|1|BB|A|1272
4V69|1|BB|U|1273
4V69|1|BB|A|1274
4V69|1|BB|A|1275
4V69|1|BB|A|1276
*
4V69|1|BB|U|1294
4V69|1|BB|C|1295
*
4V69|1|BB|G|1645
4V69|1|BB|C|1646
4V69|1|BB|U|1647
4V69|1|BB|U|1648
*
4V69|1|BB|A|2009
4V69|1|BB|G|2010

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BN

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22