J4_4V6D_010

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6D_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.071

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V6D|1|BA|A|1772
4V6D|1|BA|A|1773
4V6D|1|BA|C|1774
4V6D|1|BA|U|1775
4V6D|1|BA|G|1776
*
4V6D|1|BA|C|1788
4V6D|1|BA|A|1789
4V6D|1|BA|C|1790
4V6D|1|BA|A|1791
4V6D|1|BA|G|1792
*
4V6D|1|BA|U|1827
4V6D|1|BA|G|1828
4V6D|1|BA|A|1829
4V6D|1|BA|C|1830
*
4V6D|1|BA|G|1975
4V6D|1|BA|U|1976
4V6D|1|BA|A|1977
4V6D|1|BA|A|1978
4V6D|1|BA|U|1979

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2