3D structure

PDB id
4V6E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6E_010 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.065
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V6E|1|BA|A|1772
4V6E|1|BA|A|1773
4V6E|1|BA|C|1774
4V6E|1|BA|U|1775
4V6E|1|BA|G|1776
*
4V6E|1|BA|C|1788
4V6E|1|BA|A|1789
4V6E|1|BA|C|1790
4V6E|1|BA|A|1791
4V6E|1|BA|G|1792
*
4V6E|1|BA|U|1827
4V6E|1|BA|G|1828
4V6E|1|BA|A|1829
4V6E|1|BA|C|1830
*
4V6E|1|BA|G|1975
4V6E|1|BA|U|1976
4V6E|1|BA|A|1977
4V6E|1|BA|A|1978
4V6E|1|BA|U|1979

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BC
50S ribosomal protein L2

Coloring options:


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