3D structure

PDB id
4V6E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
4V6E|1|DA|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6E_025 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.1349
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

4V6E|1|DA|C|2285
4V6E|1|DA|G|2286
4V6E|1|DA|A|2287
4V6E|1|DA|A|2288
4V6E|1|DA|G|2289
*
4V6E|1|DA|U|2343
4V6E|1|DA|U|2344
4V6E|1|DA|G|2345
4V6E|1|DA|A|2346
4V6E|1|DA|C|2347
*
4V6E|1|DA|G|2370
4V6E|1|DA|G|2371
4V6E|1|DA|U|2372
*
4V6E|1|DA|A|2381
4V6E|1|DA|G|2382
4V6E|1|DA|G|2383

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D1
50S ribosomal protein L33
Chain D3
50S ribosomal protein L35
Chain DO
50S ribosomal protein L18
Chain DW
50S ribosomal protein L27

Coloring options:


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